JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXW2_chr9_120751974_120798416	0/0	t0013	7780	3	2	1	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0014	7777	3	0	3	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0015	7778	2	0	0	0	0	2	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0016	7781	2	2	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0017	7779	2	1	1	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0018	7780	2	1	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0019	7778	2	2	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0020	7778	2	2	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0021	7780	2	2	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0022	7780	2	2	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0023	7780	2	0	0	0	0	2	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0024	7778	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0025	7778	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0026	7778	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0027	7778	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0028	7778	1	0	0	0	0	1	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0029	7780	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0030	7781	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0031	7779	1	0	1	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0032	7777	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0033	7778	1	0	1	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0034	7780	1	0	0	0	1	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0035	7778	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0036	7778	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0037	7778	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0038	7780	1	0	0	0	0	1	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0039	7780	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0040	7780	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0041	7778	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0042	7780	1	0	0	0	0	1	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0043	7780	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0044	7780	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW4_chr10_101605666_101700170	1/1	t0001	691	193	55	40	72	10	14	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	t0002	691	10	8	2	0	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	t0003	691	2	0	2	0	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	t0004	695	2	1	0	1	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	t0005	691	1	1	0	0	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	t0006	691	1	0	0	1	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	t0007	691	1	1	0	0	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW5_chr9_136935435_136949738	1/1	t0001	662	409	92	83	166	18	48	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0002	662	6	0	0	6	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0003	662	5	0	0	3	0	2	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0004	662	4	0	0	4	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0005	662	1	0	1	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0006	662	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0007	662	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0008	662	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0009	662	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0010	662	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0011	662	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738