JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXW5_chr9_136935435_136949738	0/0	t0012	662	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0013	662	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	t0014	662	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW7_chr4_152315544_152541092	0/0	t0001	3515	98	27	10	53	2	6	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	1/1	t0002	3516	85	10	14	48	2	9	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0003	3516	13	3	3	7	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0004	3515	10	0	2	8	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0005	3515	9	3	1	4	0	1	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0006	3516	9	8	1	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0007	3515	7	0	0	1	1	5	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0008	3516	6	0	5	0	0	1	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0009	3517	5	0	3	2	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0010	3509	4	4	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0011	3511	4	0	1	2	1	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0012	3515	2	0	0	2	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0013	3516	2	0	0	2	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0014	3510	2	2	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0015	3516	1	0	1	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0016	3534	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0017	3515	1	1	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0018	3515	1	0	1	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0019	3516	1	1	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0020	3515	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0021	3515	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0022	3516	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0023	3515	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0024	3515	1	0	0	0	0	1	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0025	3516	1	0	0	0	0	1	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	t0026	3510	1	1	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW8_chr12_116905950_117036148	1/1	t0001	3065	93	10	15	50	3	13	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0002	3065	68	28	5	32	1	2	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0003	3065	39	12	6	15	1	5	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0004	3063	16	0	0	8	0	8	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0005	3063	10	0	2	3	1	4	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0006	3065	8	8	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0007	3065	6	6	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0008	3065	6	5	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0009	3075	6	6	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0010	3065	5	3	0	0	0	2	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0011	3062	4	4	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0012	3065	3	3	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0013	3065	2	1	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0014	3065	2	0	0	0	0	2	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0015	3065	2	0	1	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0016	3065	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0017	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0018	3062	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0019	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0020	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0021	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148