JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXW8_chr12_116905950_117036148	0/0	t0022	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0023	3065	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0024	3065	1	0	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0025	3065	1	0	0	0	0	1	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0026	3065	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0027	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0028	3065	1	0	0	0	0	1	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0029	3065	1	0	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0030	3065	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0031	3065	1	0	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0032	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0033	3062	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0034	3065	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	t0035	3065	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW9_chr19_12683916_12701631	1/1	t0001	351	371	83	69	160	17	40	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	t0002	351	11	11	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	t0003	351	1	0	0	0	1	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	t0004	351	1	0	1	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	t0005	351	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	t0006	351	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FCAMR_chr1_206952967_206975460	1/1	t0001	885	197	39	36	96	3	21	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0002	885	90	35	17	30	4	4	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0003	885	78	16	13	39	3	7	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0004	885	18	0	0	18	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0005	885	3	0	0	3	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0006	885	2	0	0	0	0	2	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0007	885	1	0	0	0	0	1	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0008	885	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0009	885	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0010	885	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0011	885	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0012	885	1	0	0	0	0	1	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0013	885	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	t0014	885	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAR_chr19_54869235_54896420	0/0	t0001	1613	197	41	38	80	10	28	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/1	t0002	1613	101	6	19	55	3	17	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0003	1611	50	4	9	32	3	2	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0004	1613	29	18	8	0	1	2	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0005	1613	22	12	5	4	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0006	1611	12	10	2	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0007	1613	6	0	0	6	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0008	1613	3	0	0	3	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0009	1613	3	3	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0010	1613	3	0	0	3	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0011	1613	2	0	2	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0012	1613	2	0	0	2	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0013	1613	2	0	0	2	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0014	1611	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0015	1613	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0016	1612	1	0	0	0	1	0	copy fasta	FCAR	chr19	54869235	54896420