JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCAR_chr19_54869235_54896420	0/0	t0017	1613	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0018	1613	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0019	1613	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0020	1613	1	0	0	1	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0021	1613	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	t0022	1613	1	0	1	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCER1A_chr1_159297336_159313202	1/1	t0001	300	400	86	55	203	10	44	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	t0002	300	24	2	12	1	4	5	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	t0003	300	24	0	5	18	0	1	copy fasta	FCER1A	chr1	159297336	159313202
FCER1G_chr1_161210295_161224245	1/1	t0001	330	311	78	50	130	14	37	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	t0002	330	120	8	21	85	3	3	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	t0003	330	8	2	2	0	0	4	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	t0004	330	5	2	3	0	0	0	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	t0005	330	2	0	0	2	0	0	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	t0006	330	1	0	0	0	1	0	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	t0007	330	1	0	0	1	0	0	copy fasta	FCER1G	chr1	161210295	161224245
FCER2_chr19_7683776_7707131	1/1	t0001	620	412	86	76	184	16	48	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0002	556	26	4	8	10	2	2	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0003	620	9	9	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0004	620	4	0	0	4	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0005	652	1	0	0	1	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0006	588	1	0	1	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0007	620	1	0	0	1	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0008	620	1	0	1	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	t0009	620	1	1	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCF1_chr14_74708144_74743620	0/0	t0001	3744	95	22	16	37	3	17	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/1	t0002	3745	87	1	15	57	7	6	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	1/0	t0003	3745	79	16	19	37	3	3	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0004	3744	38	21	10	7	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0005	3745	6	6	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0006	3745	5	0	4	0	1	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0007	3745	4	0	0	4	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0008	3744	4	3	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0009	3744	3	3	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0010	3745	3	1	1	1	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0011	3746	3	3	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0012	3744	3	0	1	1	0	1	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0013	3743	3	0	0	3	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0014	3744	3	3	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0015	3745	2	0	0	2	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0016	3745	2	1	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0017	3744	2	0	0	2	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0018	3744	2	2	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0019	3745	2	2	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0020	3744	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0021	3744	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0022	3745	1	0	0	0	0	1	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0023	3745	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0024	3745	1	0	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0025	3746	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620