JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCF1_chr14_74708144_74743620	0/0	t0026	3744	1	0	0	1	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0027	3744	1	0	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0028	3745	1	0	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0029	3744	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0030	3745	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0031	3745	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0032	3744	1	0	0	1	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0033	3744	1	0	0	1	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0034	3743	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0035	3746	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0036	3744	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	t0037	3745	1	0	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCGR1A_chr1_149777694_149796675	1/1	t0001	209	315	72	58	130	17	36	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0002	209	50	10	1	31	0	8	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0003	209	31	0	6	25	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0004	209	10	9	1	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0005	209	3	0	1	0	1	1	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0006	209	3	3	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0007	209	1	0	0	0	0	1	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	t0008	209	1	0	1	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR2A_chr1_161500457_161524829	0/1	t0001	1694	120	32	27	39	6	15	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	1/0	t0002	1693	104	19	29	31	6	18	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0003	1694	64	4	8	45	0	7	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0004	1694	53	9	4	37	0	3	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0005	1694	50	0	2	48	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0006	1694	13	0	0	13	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0007	1694	10	5	3	0	1	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0008	1694	9	9	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0009	1693	8	8	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0010	1693	7	7	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0011	1694	3	0	1	0	1	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0012	1692	2	0	2	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0013	1694	2	0	1	0	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0014	1694	1	0	0	1	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0015	1692	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0016	1692	1	0	0	0	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0017	1694	1	0	0	1	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0018	1693	1	0	0	1	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0019	1693	1	0	1	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0020	1691	1	0	1	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0021	1694	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0022	1694	1	0	1	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0023	1694	1	0	0	0	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	t0024	1694	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2B_chr1_161658143_161683654	0/1	t0001	1201	255	57	60	102	4	31	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	1/0	t0002	1201	114	22	18	58	7	8	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0003	1201	8	7	1	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0004	1201	6	5	1	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0005	1201	3	0	0	2	0	1	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0006	1201	3	0	0	3	0	0	copy fasta	FCGR2B	chr1	161658143	161683654