JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCGR2B_chr1_161658143_161683654	0/0	t0007	1201	2	0	0	0	1	1	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0008	1201	1	0	0	0	0	1	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0009	1201	1	1	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	t0010	1201	1	0	0	1	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR3A_chr1_161536759_161554818	1/1	t0001	1336	391	70	63	205	12	39	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0002	1336	32	6	5	13	1	7	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0003	1335	6	6	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0004	1336	6	5	1	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0005	1336	6	6	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0006	1336	4	4	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0007	1336	1	0	0	1	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0008	1336	1	0	0	1	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0009	1336	1	0	0	1	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0010	1336	1	0	0	0	1	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0011	1336	1	0	1	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0012	1336	1	1	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	t0013	1336	1	0	0	1	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3B_chr1_161618196_161636176	0/0	t0001	1403	114	30	19	40	8	17	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0002	1402	105	3	26	60	3	13	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0003	1402	49	2	1	46	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0004	1403	17	7	0	9	0	1	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0005	1403	11	0	4	0	4	3	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0006	1403	9	0	0	9	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0007	1403	8	8	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0008	1403	7	6	0	1	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0009	1402	5	0	0	5	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0010	1402	4	0	1	0	1	2	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	1/0	t0011	1402	4	3	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0012	1402	3	2	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0013	1402	3	0	0	3	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0014	1403	3	0	0	3	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0015	1403	2	0	0	1	0	1	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0016	1402	2	0	2	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0017	1402	2	2	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0018	1402	1	0	0	1	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0019	1403	1	0	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0020	1403	1	1	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0021	1402	1	0	0	1	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0022	1402	1	0	0	1	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0023	1403	1	0	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	t0024	1402	1	0	0	0	0	1	copy fasta	FCGR3B	chr1	161618196	161636176
FCGRT_chr19_49507661_49531428	1/1	t0001	414	347	92	65	132	12	44	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	t0002	414	4	0	0	4	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	t0003	414	3	2	1	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	t0004	414	2	2	0	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCHO1_chr19_17746477_17793561	1/1	t0001	539	290	78	58	109	9	34	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0002	539	35	9	14	3	3	6	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0003	539	10	5	1	2	0	2	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0004	539	4	0	2	0	2	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0005	539	3	0	1	0	0	2	copy fasta	FCHO1	chr19	17746477	17793561