Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP13_chr15_85375603_85754355	0/0	t0052	4890	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0053	4890	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/1	t0054	4890	1	0	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0055	4878	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0056	4890	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0057	4890	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0058	4890	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0059	4887	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0060	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0061	4886	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0062	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0063	4886	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0064	4890	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0065	4890	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0066	4890	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0067	4884	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0068	4890	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0069	4891	1	0	0	0	1	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0070	4887	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0071	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0072	4887	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0073	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0074	4890	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0075	4886	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0076	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0077	4886	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0078	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0079	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0080	4886	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0081	4900	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	t0082	4886	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP14_chrX_119890893_119925716	1/1	t0001	328	294	70	53	126	11	32	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	t0002	328	7	6	1	0	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	t0003	327	1	0	0	1	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	t0004	328	1	0	1	0	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	t0005	325	1	0	0	1	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP17A_chrX_1586604_1607520	0/1	t0001	1112	72	13	20	29	2	7	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	1/0	t0002	1112	48	9	13	19	1	5	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0003	1112	7	5	0	0	0	2	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0004	1112	4	4	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0005	1112	4	4	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0006	1113	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0007	1112	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0008	1112	1	0	0	0	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0009	1112	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0010	1112	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0011	1111	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0012	1112	1	0	0	0	1	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0013	1112	1	0	0	0	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0014	1112	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520