JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCHO1_chr19_17746477_17793561	0/0	t0006	539	2	2	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0007	539	2	0	1	0	0	1	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0008	539	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0009	539	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0010	539	1	0	1	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0011	539	1	0	0	0	0	1	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0012	539	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	t0013	524	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO2_chr5_72951041_73095522	0/0	t0001	2489	107	14	22	54	2	15	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	1/0	t0002	2489	72	24	9	30	1	7	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0003	2489	47	9	3	35	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0004	2489	27	1	9	7	2	8	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0005	2489	9	9	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0006	2489	4	4	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0007	2489	4	1	3	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0008	2489	3	3	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/1	t0009	2489	2	0	0	0	1	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0010	2489	2	2	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0011	2489	1	1	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0012	2489	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0013	2489	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0014	2489	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0015	2489	1	0	1	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0016	2489	1	0	1	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0017	2489	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0018	2489	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	t0019	2489	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHSD1_chr5_141634302_141656418	1/0	t0001	2247	248	26	50	142	6	23	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0002	2247	60	8	14	29	1	8	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/1	t0003	2250	50	30	13	0	5	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0004	2247	18	17	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0005	2250	13	4	1	0	1	7	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0006	2250	7	0	0	7	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0007	2250	5	5	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0008	2247	5	0	0	5	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0009	2247	4	0	0	4	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0010	2247	3	0	0	0	1	2	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0011	2250	3	3	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0012	2247	2	2	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0013	2247	2	0	0	0	0	2	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0014	2250	2	1	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0015	2247	1	0	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0016	2247	1	0	0	0	0	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0017	2247	1	0	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0018	2250	1	0	0	1	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0019	2250	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	t0020	2250	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD2_chr11_72831745_73147318	0/1	t0001	2488	211	60	44	80	9	17	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0002	2488	32	0	5	20	1	6	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0003	2489	13	6	2	0	0	5	copy fasta	FCHSD2	chr11	72831745	73147318