JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCHSD2_chr11_72831745_73147318	0/0	t0004	2488	5	5	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0005	2488	5	0	5	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0006	2489	3	3	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0007	2488	3	3	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0008	2488	3	0	0	3	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0009	2488	2	0	0	2	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	1/0	t0010	2488	2	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0011	2488	2	2	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0012	2488	1	0	0	0	0	1	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0013	2488	1	0	1	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0014	2488	1	0	0	1	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0015	2488	1	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0016	2488	1	0	1	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0017	2488	1	0	0	1	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0018	2488	1	0	0	1	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0019	2488	1	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	t0020	2488	1	0	0	0	0	1	copy fasta	FCHSD2	chr11	72831745	73147318
FCMR_chr1_206898317_206926941	1/1	t0001	1790	156	29	32	73	4	16	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0002	1790	77	8	19	36	8	6	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0003	1790	52	24	6	21	0	1	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0004	1790	28	4	1	23	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0005	1791	16	8	3	5	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0006	1789	12	9	2	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0007	1791	10	7	0	1	0	2	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0008	1790	8	6	2	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0009	1791	4	0	0	4	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0010	1791	3	0	3	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0011	1790	3	0	0	3	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0012	1791	2	0	2	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0013	1790	2	0	0	2	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0014	1790	2	0	0	0	0	2	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0015	1790	1	0	0	0	0	1	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0016	1791	1	1	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0017	1790	1	1	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0018	1789	1	0	0	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	t0019	1791	1	1	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCN1_chr9_134898232_134922912	0/0	t0001	6608	11	0	1	8	0	2	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0002	6611	9	0	4	5	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0003	6608	8	0	1	7	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0004	6611	7	0	5	0	1	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0005	6608	6	2	0	2	0	2	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0006	6605	6	6	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0007	6614	5	1	0	3	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0008	6611	5	1	0	3	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0009	6653	5	0	0	5	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0010	6602	4	1	0	3	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0011	6617	4	0	4	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0012	6614	4	1	0	3	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0013	6614	4	1	1	1	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0014	6611	4	0	0	4	0	0	copy fasta	FCN1	chr9	134898232	134922912