JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCN1_chr9_134898232_134922912	0/0	t0215	6640	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0216	6665	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0217	6653	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0218	6650	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0219	6647	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0220	6644	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0221	6644	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0222	6668	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0223	6650	1	0	0	0	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0224	6644	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0225	6641	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0226	6635	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0227	6656	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0228	6653	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0229	6653	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0230	6653	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0231	6644	1	0	0	0	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0232	6641	1	0	0	0	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0233	6641	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0234	6659	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0235	6650	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0236	6662	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0237	6650	1	0	0	0	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0238	6659	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0239	6650	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0240	6647	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0241	6662	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0242	6632	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0243	6629	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0244	6605	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0245	6605	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0246	6656	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0247	6653	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0248	6641	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0249	6638	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0250	6623	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0251	6605	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0252	6647	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0253	6599	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0254	6599	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0255	6629	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0256	6620	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0257	6606	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0258	6623	1	0	0	0	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0259	6611	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0260	6623	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0261	6653	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0262	6635	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0263	6647	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0264	6656	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912