JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCN1_chr9_134898232_134922912	0/0	t0265	6641	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0266	6623	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0267	6629	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0268	6635	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0269	6632	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0270	6632	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0271	6644	1	0	0	0	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0272	6656	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0273	6605	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0274	6617	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0275	6605	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0276	6632	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0277	6641	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0278	6611	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0279	6629	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0280	6635	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0281	6629	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0282	6618	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0283	6629	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0284	6623	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0285	6629	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0286	6617	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0287	6623	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0288	6629	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0289	6632	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0290	6617	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0291	6617	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0292	6629	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0293	6641	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0294	6635	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0295	6626	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0296	6658	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0297	6590	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0298	6590	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0299	6596	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0300	6602	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0301	6590	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0302	6600	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0303	6617	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0304	6610	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0305	6604	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	t0306	6661	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN2_chr9_134875810_134892523	1/0	t0001	121	253	29	47	141	7	28	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	t0002	121	135	44	13	68	3	7	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/1	t0003	121	76	24	22	14	6	9	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	t0004	122	4	0	0	0	0	4	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	t0005	121	3	1	0	2	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	t0006	121	1	0	0	1	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN3_chr1_27364110_27379824	1/1	t0001	133	404	92	80	170	14	46	copy fasta	FCN3	chr1	27364110	27379824
FCRL1_chr1_157789403_157825120	1/1	t0001	1780	285	66	52	127	10	28	copy fasta	FCRL1	chr1	157789403	157825120