JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCRL1_chr1_157789403_157825120	0/0	t0002	1780	76	1	13	49	6	7	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0003	1780	14	0	0	14	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0004	1780	12	12	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0005	1780	6	6	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0006	1780	4	3	1	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0007	1780	4	4	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0008	1780	2	2	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0009	1780	1	1	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0010	1780	1	0	0	0	0	1	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	t0011	1780	1	1	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL2_chr1_157740733_157782132	1/0	t0001	1063	298	51	58	153	12	23	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0002	1063	18	0	4	5	0	9	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0003	1063	18	0	6	9	2	1	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0004	1063	16	16	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0005	1063	11	11	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0006	1063	8	7	1	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/1	t0007	1063	5	0	3	0	0	1	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0008	1063	3	3	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0009	1063	2	2	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	t0010	1063	1	0	0	1	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL3_chr1_157671481_157705769	1/0	t0001	2434	123	5	24	77	4	12	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0002	2434	66	8	15	37	3	3	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/1	t0003	2434	55	10	9	29	4	2	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0004	2434	18	4	4	7	0	3	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0005	2434	16	2	0	13	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0006	2434	12	6	2	4	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0007	2434	11	0	5	0	0	6	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0008	2434	10	10	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0009	2434	8	8	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0010	2434	8	7	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0011	2434	7	0	0	7	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0012	2434	6	6	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0013	2434	5	2	2	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0014	2434	4	3	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0015	2434	4	4	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0016	2434	3	3	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0017	2434	3	3	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0018	2434	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0019	2434	2	1	0	0	1	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0020	2434	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0021	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0022	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0023	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0024	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0025	2434	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0026	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0027	2434	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0028	2434	1	0	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0029	2434	1	0	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0030	2434	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769