JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCRL3_chr1_157671481_157705769	0/0	t0031	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0032	2434	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0033	2434	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0034	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0035	2434	1	0	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0036	2434	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	t0037	2434	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL4_chr1_157568747_157603085	0/0	t0001	1919	154	5	25	100	6	18	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0002	1919	105	13	31	50	3	8	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	1/1	t0003	1919	38	2	7	17	5	5	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0004	1919	22	22	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0005	1919	18	7	1	7	0	3	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0006	1919	15	9	3	2	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0007	1919	14	14	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0008	1919	5	5	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0009	1919	5	5	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0010	1919	3	0	1	0	0	2	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0011	1921	3	0	0	3	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0012	1919	3	3	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0013	1946	2	2	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0014	1919	2	0	2	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0015	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0016	1919	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0017	1919	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0018	1919	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0019	1919	1	0	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0020	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0021	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0022	1919	1	0	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0023	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0024	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0025	1919	1	0	0	0	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0026	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	t0027	1919	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL5_chr1_157508377_157557515	0/1	t0001	2452	137	6	34	73	6	17	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	1/0	t0002	2452	75	28	19	12	5	10	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0003	2452	40	1	1	37	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0004	2452	34	9	0	21	0	4	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0005	2452	14	9	3	0	2	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0006	2452	10	9	0	0	1	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0007	2452	8	7	1	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0008	2456	5	5	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0009	2452	5	2	1	1	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0010	2452	4	0	0	4	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0011	2452	3	0	2	0	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0012	2451	3	3	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0013	2452	2	1	1	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0014	2452	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0015	2451	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0016	2451	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515