Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP17A_chrX_1586604_1607520	0/0	t0015	1101	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0016	1112	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0017	1112	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0018	1112	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0019	1114	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0020	1116	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	t0021	1113	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP1_chr17_57080246_57126344	0/0	t0001	1197	84	2	17	54	1	10	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0002	1198	77	4	15	54	0	4	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0003	1198	37	4	3	27	1	2	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0004	1198	36	0	8	12	3	13	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	1/1	t0005	1198	34	15	12	0	4	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0006	1199	25	13	3	7	2	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0007	1198	23	9	9	2	0	3	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0008	1199	15	9	5	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0009	1197	8	4	1	3	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0010	1197	7	1	0	5	0	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0011	1197	5	5	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0012	1197	5	0	3	0	1	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0013	1198	3	3	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0014	1198	3	0	0	3	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0015	1199	3	3	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0016	1199	3	3	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0017	1198	2	0	0	0	0	2	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0018	1198	2	0	2	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0019	1197	2	0	0	2	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0020	1199	2	0	1	0	0	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0021	1198	2	2	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0022	1198	2	2	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0023	1198	2	1	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0024	1196	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0025	1197	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0026	1197	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0027	1196	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0028	1198	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0029	1197	1	0	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0030	1198	1	0	0	0	0	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0031	1199	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0032	1199	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0033	1198	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0034	1198	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0035	1210	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0036	1199	1	0	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	t0037	1198	1	0	0	0	0	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP3_chr12_4610518_4654051	1/0	t0001	773	273	77	32	134	6	23	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/1	t0002	773	132	15	37	55	11	13	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	t0003	773	8	7	1	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	t0004	773	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	t0005	773	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	t0006	773	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051