JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FCRL5_chr1_157508377_157557515	0/0	t0017	2452	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0018	2452	2	0	0	2	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0019	2452	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0020	2452	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0021	2452	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0022	2451	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0023	2452	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0024	2452	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0025	2452	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0026	2452	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0027	2452	1	0	0	0	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0028	2451	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0029	2452	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0030	2452	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0031	2452	1	0	0	0	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0032	2452	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0033	2452	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	t0034	2452	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL6_chr1_159797360_159821257	1/0	t0001	662	420	86	68	210	9	46	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/1	t0002	662	18	1	9	1	2	4	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0003	662	5	5	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0004	662	3	0	0	3	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0005	662	1	0	1	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0006	688	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0007	662	1	1	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0008	662	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0009	662	1	0	0	0	1	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	t0010	662	1	1	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRLA_chr1_161702229_161719352	1/1	t0001	1009	443	83	81	215	14	48	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0002	1009	8	7	1	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0003	1009	7	0	0	7	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0004	1009	5	5	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0005	1009	4	4	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0006	1009	2	0	0	2	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0007	1009	2	0	0	0	2	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	t0008	1009	1	1	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLB_chr1_161716544_161733143	0/1	t0001	716	227	33	52	105	10	26	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0002	716	93	26	6	53	2	6	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0003	716	59	37	4	11	0	7	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0004	716	47	0	7	37	2	1	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0005	716	13	0	1	12	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	1/0	t0006	716	10	0	4	0	1	4	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0007	716	3	0	0	2	1	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0008	716	2	0	0	0	0	2	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0009	716	1	0	1	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	t0010	716	1	0	1	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCSK_chr16_70449595_70485274	1/1	t0001	653	342	73	76	138	14	39	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	t0002	653	12	12	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	t0003	653	1	0	0	0	0	1	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	t0004	653	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274