JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FDCSP_chr4_70221124_70240252	0/1	t0001	256	402	67	69	212	11	42	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	1/0	t0002	256	41	22	7	6	3	2	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	0/0	t0003	256	5	5	0	0	0	0	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	0/0	t0004	256	2	2	0	0	0	0	copy fasta	FDCSP	chr4	70221124	70240252
FDFT1_chr8_11797741_11844298	0/0	t0001	782	207	32	34	114	6	21	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	1/1	t0002	782	104	42	26	8	8	18	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0003	782	99	1	15	72	2	9	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0004	782	10	3	1	6	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0005	782	10	0	0	10	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0006	782	8	8	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0007	782	3	0	3	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0008	782	3	3	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0009	782	2	0	0	1	0	1	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0010	782	2	2	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0011	782	2	2	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0012	782	2	2	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0013	782	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0014	782	1	0	1	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0015	782	1	0	0	0	0	1	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0016	782	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0017	782	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	t0018	782	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDPS_chr1_155303866_155325665	1/1	t0001	157	345	95	58	134	14	42	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	t0002	157	1	1	0	0	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDX1_chr11_110424948_110469884	1/0	t0001	2590	128	26	30	52	7	12	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0002	2590	118	25	19	57	4	13	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/1	t0003	2589	81	11	15	45	1	8	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0004	2589	13	3	1	5	0	4	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0005	2591	13	1	0	12	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0006	2590	7	6	0	1	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0007	2591	6	0	1	4	0	1	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0008	2589	6	4	2	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0009	2590	4	0	0	3	0	1	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0010	2589	4	0	0	4	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0011	2589	3	3	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0012	2589	2	1	1	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0013	2590	2	2	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0014	2590	2	0	0	0	0	2	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0015	2590	1	0	0	0	0	1	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0016	2590	1	0	0	1	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0017	2589	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0018	2590	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0019	2589	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0020	2590	1	0	0	1	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0021	2590	1	0	1	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0022	2590	1	0	0	1	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0023	2590	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0024	2590	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	t0025	2589	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX2_chr19_10305045_10321015	1/1	t0001	461	416	89	78	190	16	41	copy fasta	FDX2	chr19	10305045	10321015