JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FDX2_chr19_10305045_10321015	0/0	t0002	461	25	5	7	8	2	3	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	t0003	461	1	0	0	1	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	t0004	461	1	0	1	0	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	t0005	472	1	0	0	1	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDXACB1_chr11_111869056_111884165	0/0	t0001	901	163	37	18	94	1	13	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	1/1	t0002	900	102	11	28	42	2	17	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0003	902	78	15	20	32	6	5	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0004	900	19	14	4	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0005	902	13	6	3	3	0	1	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0006	901	4	4	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0007	903	3	2	1	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0008	900	2	0	0	0	1	1	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0009	901	2	2	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0010	901	2	1	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0011	901	1	0	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0012	901	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0013	902	1	0	0	0	0	1	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	t0014	902	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXR_chr17_74857497_74877994	0/0	t0001	371	251	58	50	97	13	33	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	1/1	t0002	371	102	3	16	62	5	14	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0003	371	23	10	0	11	0	2	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0004	371	22	18	2	2	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0005	371	10	9	1	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0006	371	1	0	0	0	0	1	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0007	371	1	0	1	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0008	371	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	t0009	371	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FECH_chr18_57539377_57591702	0/0	t0001	6421	13	0	8	0	3	2	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0002	6420	11	0	2	9	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0003	6421	11	0	5	3	0	3	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0004	6420	9	0	1	5	2	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0005	6421	9	0	1	8	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0006	6421	9	1	3	5	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0007	6420	7	1	0	5	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0008	6421	7	3	1	3	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0009	6421	6	6	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0010	6420	5	0	0	5	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0011	6419	5	0	0	5	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0012	6419	5	0	3	2	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0013	6420	5	0	0	5	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0014	6422	5	1	0	1	0	3	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0015	6422	5	0	1	4	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0016	6422	5	0	4	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0017	6421	5	0	1	4	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0018	6420	4	2	2	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0019	6419	4	0	0	4	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0020	6420	4	0	1	2	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0021	6421	4	0	1	3	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0022	6418	4	0	0	4	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0023	6422	4	0	1	0	0	3	copy fasta	FECH	chr18	57539377	57591702