JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FECH_chr18_57539377_57591702	0/0	t0124	6421	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0125	6421	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0126	6420	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0127	6419	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0128	6420	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0129	6421	1	0	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0130	6420	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0131	6421	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0132	6421	1	0	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0133	6421	1	0	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0134	6421	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0135	6420	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0136	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0137	6421	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0138	6421	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0139	6422	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0140	6422	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0141	6421	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0142	6421	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0143	6421	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0144	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0145	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0146	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0147	6421	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0148	6422	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0149	6418	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0150	6421	1	0	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0151	6421	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0152	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0153	6422	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0154	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0155	6422	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0156	6422	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0157	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0158	6420	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0159	6445	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0160	6446	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0161	6446	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0162	6447	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0163	6447	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0164	6447	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0165	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0166	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0167	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0168	6421	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0169	6423	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0170	6423	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0171	6423	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0172	6425	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0173	6425	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702