JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
FECH_chr18_57539377_57591702	0/0	t0174	6425	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0175	6426	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0176	6426	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0177	6420	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0178	6420	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0179	6421	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0180	6425	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0181	6421	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0182	6421	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0183	6421	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0184	6421	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0185	6424	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0186	6424	1	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0187	6424	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0188	6425	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0189	6424	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0190	6424	1	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0191	6425	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0192	6420	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0193	6420	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0194	6420	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0195	6422	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0196	6421	1	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0197	6421	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0198	6422	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0199	6422	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0200	6422	1	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0201	6421	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0202	6422	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0203	6423	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0204	6422	1	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0205	6422	1	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0206	6423	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0207	6423	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0208	6421	1	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0209	6422	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0210	6421	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0211	6421	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0212	6425	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0213	6422	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0214	6423	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0215	6423	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0216	6423	1	0	0	1	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0217	6422	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0218	6422	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0219	6422	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0220	6420	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0221	6423	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0222	6420	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	t0223	6425	1	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702