JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEM1A_chr19_4786734_4806273	0/0	t0049	7531	2	1	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0050	7545	2	0	1	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0051	7543	2	0	0	2	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0052	7532	2	0	0	2	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0053	7532	2	0	0	2	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0054	7526	2	2	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0055	7545	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0056	7529	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0057	7914	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0058	7531	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0059	7531	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0060	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0061	7561	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0062	7538	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0063	7542	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0064	7532	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0065	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0066	7531	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0067	7534	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0068	7533	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0069	7527	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0070	7539	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0071	7545	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0072	7533	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0073	7549	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0074	7528	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0075	7538	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0076	7542	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0077	7544	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0078	7541	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0079	7564	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0080	7541	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0081	7551	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0082	7540	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0083	7541	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0084	7539	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0085	7532	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0086	7539	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0087	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0088	7543	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0089	7567	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0090	7567	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0091	7566	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0092	7556	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0093	7554	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0094	7549	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0095	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0096	7543	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0097	7551	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0098	7541	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273