Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP3_chr12_4610518_4654051	0/0	t0007	773	1	0	0	0	1	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	t0008	773	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP4_chrX_50185777_50206007	1/1	t0001	302	271	64	41	133	7	24	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	t0002	302	10	10	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	t0003	302	2	2	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	t0004	302	1	1	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	t0005	302	1	0	0	1	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	t0006	302	1	1	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	t0007	303	1	0	0	1	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP5_chr14_64460499_64479503	1/0	t0001	5204	144	21	26	73	6	17	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0002	5204	78	19	18	29	1	11	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0003	5205	55	3	9	32	5	6	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/1	t0004	5206	42	0	3	38	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0005	5205	14	8	1	4	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0006	5205	8	0	8	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0007	5200	7	7	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0008	5207	7	7	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0009	5204	5	4	1	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0010	5201	5	0	0	5	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0011	5204	4	4	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0012	5206	4	1	1	1	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0013	5204	4	4	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0014	5204	4	0	0	4	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0015	5204	4	1	2	0	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0016	5203	3	0	2	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0017	5204	3	0	0	3	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0018	5203	3	1	2	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0019	5204	2	0	0	0	0	2	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0020	5205	2	2	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0021	5204	2	0	1	0	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0022	5203	2	0	0	2	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0023	5201	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0024	5205	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0025	5204	1	0	1	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0026	5206	1	0	0	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0027	5206	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0028	5205	1	0	0	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0029	5205	1	0	0	0	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0030	5206	1	0	0	0	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0031	5205	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0032	5203	1	0	0	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0033	5206	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0034	5204	1	0	0	0	1	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0035	5205	1	0	0	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0036	5205	1	0	0	0	1	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0037	5204	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0038	5204	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0039	5204	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0040	5194	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0041	5205	1	0	1	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503