JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEM1A_chr19_4786734_4806273	0/0	t0149	7534	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0150	7528	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0151	7552	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0152	7548	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0153	7548	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0154	7532	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0155	7530	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0156	7527	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0157	7535	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0158	7528	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0159	7535	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0160	7547	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0161	7543	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0162	7551	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0163	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0164	7536	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0165	7536	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0166	7550	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0167	7533	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0168	7547	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0169	7547	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0170	7564	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0171	7566	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0172	7565	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0173	7548	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0174	7526	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0175	7526	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0176	7558	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0177	7527	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0178	7553	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0179	7563	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0180	7537	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0181	7554	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0182	7560	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0183	7534	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0184	7540	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0185	7542	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0186	7565	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0187	7540	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0188	7535	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0189	7545	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0190	7537	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0191	7537	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0192	7561	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0193	7544	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0194	7537	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0195	7532	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0196	7554	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0197	7540	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0198	7538	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273