JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEM1A_chr19_4786734_4806273	0/0	t0249	7528	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0250	7550	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0251	7549	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0252	7548	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0253	7547	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0254	7546	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0255	7546	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0256	7545	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0257	7532	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0258	7523	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0259	7528	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0260	7527	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0261	7553	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0262	7548	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0263	7533	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0264	7530	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0265	7522	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0266	7533	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0267	7543	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0268	7541	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0269	7530	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0270	7529	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0271	7532	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0272	7545	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0273	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0274	7535	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0275	7531	1	0	0	0	1	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0276	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0277	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0278	7546	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0279	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0280	7535	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0281	7531	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0282	7534	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0283	7550	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0284	7545	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0285	7544	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0286	7536	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0287	7537	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0288	7533	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0289	7533	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0290	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0291	7531	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0292	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0293	7544	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0294	7544	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0295	7544	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0296	7538	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0297	7528	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0298	7552	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273