JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEM1A_chr19_4786734_4806273	0/0	t0299	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0300	7174	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0301	7538	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0302	7535	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0303	7537	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0304	7534	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0305	7562	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0306	7528	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0307	7533	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	t0308	7532	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1B_chr15_68272745_68300862	1/0	t0001	5294	192	45	45	67	9	25	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/1	t0002	5294	31	8	10	1	4	7	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0003	5290	6	0	5	0	0	1	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0004	5300	6	6	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0005	5300	6	0	0	6	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0006	5295	5	5	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0007	5299	5	5	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0008	5298	5	0	0	0	0	5	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0009	5294	5	0	0	5	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0010	5294	5	0	0	5	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0011	5294	4	4	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0012	5300	3	2	1	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0013	5294	3	0	0	3	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0014	5294	2	0	0	0	2	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0015	5294	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0016	5294	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0017	5294	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0018	5300	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0019	5299	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0020	5294	2	0	0	0	1	1	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0021	5294	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0022	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0023	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0024	5300	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0025	5293	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0026	5299	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0027	5299	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0028	5299	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0029	5299	1	0	0	0	0	1	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0030	5294	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0031	5295	1	0	1	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0032	5294	1	0	1	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0033	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0034	5317	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0035	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0036	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0037	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0038	5294	1	0	1	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0039	5294	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0040	5294	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862