JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEM1B_chr15_68272745_68300862	0/0	t0041	5294	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	t0042	5294	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1C_chr5_115515908_115549775	1/0	t0001	3844	144	28	33	59	7	16	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/1	t0002	3844	106	8	22	60	6	9	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0003	3842	48	11	5	24	2	6	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0004	3843	11	7	1	2	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0005	3840	11	0	0	11	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0006	3842	9	0	0	9	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0007	3842	8	0	0	8	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0008	3844	7	0	0	7	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0009	3844	6	1	1	0	0	4	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0010	3844	5	5	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0011	3844	5	4	1	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0012	3844	4	0	0	4	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0013	3844	4	4	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0014	3846	3	3	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0015	3843	3	3	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0016	3842	2	2	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0017	3844	2	2	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0018	3844	2	0	0	0	2	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0019	3844	2	2	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0020	3844	2	0	2	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0021	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0022	3844	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0023	3842	1	0	0	0	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0024	3844	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0025	3840	1	0	0	0	1	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0026	3840	1	0	0	0	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0027	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0028	3844	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0029	3844	1	0	1	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0030	3844	1	0	0	0	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0031	3844	1	0	0	0	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0032	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0033	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0034	3844	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0035	3844	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0036	3844	1	0	0	0	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0037	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0038	3843	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0039	3844	1	0	0	0	0	1	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0040	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0041	3844	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	t0042	3844	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEN1_chr11_61787911_61802238	1/1	t0001	874	203	83	32	57	8	21	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0002	874	124	3	30	75	6	10	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0003	874	2	0	0	2	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0004	874	2	0	0	0	2	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0005	874	2	0	2	0	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0006	874	1	1	0	0	0	0	copy fasta	FEN1	chr11	61787911	61802238