JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEN1_chr11_61787911_61802238	0/0	t0007	874	1	0	0	0	1	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0008	874	1	1	0	0	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0009	874	1	0	0	0	1	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	t0010	874	1	0	0	0	0	1	copy fasta	FEN1	chr11	61787911	61802238
FER1L5_chr2_96637764_96709883	1/1	t0001	265	224	86	40	68	12	16	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	t0002	265	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	t0003	265	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L6_chr8_123846987_124125061	1/0	t0001	478	74	17	10	40	0	6	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/1	t0002	478	62	16	20	18	3	4	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0003	478	31	13	9	4	3	2	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0004	478	18	8	2	6	2	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0005	478	4	4	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0006	478	2	0	0	2	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0007	478	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0008	478	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0009	478	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0010	478	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	t0011	478	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FERD3L_chr7_19139782_19150421	1/1	t0001	140	468	93	82	229	14	48	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	t0002	140	1	1	0	0	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	t0003	140	1	0	0	1	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERMT1_chr20_6069845_6128030	0/0	t0001	2605	74	34	8	27	1	4	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0002	2605	60	2	9	43	2	4	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0003	2605	36	3	10	13	3	7	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0004	2605	27	4	4	19	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0005	2605	21	0	0	18	2	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0006	2605	19	0	0	14	1	4	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/1	t0007	2605	12	0	7	1	2	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0008	2606	9	0	9	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0009	2605	9	2	0	6	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0010	2605	8	8	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0011	2605	8	2	1	3	0	2	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0012	2605	8	0	1	7	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0013	2605	6	0	5	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0014	2604	5	4	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0015	2606	4	0	1	3	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0016	2604	3	3	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0017	2606	3	1	0	0	0	2	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0018	2604	3	1	2	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0019	2605	3	3	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0020	2606	3	0	1	0	0	2	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0021	2605	3	1	0	2	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0022	2605	2	2	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0023	2605	2	2	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0024	2604	2	2	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0025	2606	2	0	0	1	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0026	2605	2	2	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0027	2606	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0028	2605	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	1/0	t0029	2604	1	0	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030