JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FERMT1_chr20_6069845_6128030	0/0	t0030	2603	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0031	2605	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0032	2605	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0033	2604	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0034	2604	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0035	2606	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0036	2604	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0037	2604	1	0	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0038	2604	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0039	2605	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0040	2606	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0041	2603	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0042	2604	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0043	2603	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0044	2605	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0045	2605	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0046	2605	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0047	2606	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0048	2605	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0049	2605	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0050	2605	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0051	2605	1	0	0	0	1	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0052	2606	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0053	2604	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0054	2604	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0055	2606	1	0	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0056	2605	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0057	2606	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0058	2604	1	0	0	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0059	2604	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	t0060	2603	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT2_chr14_52852273_52956050	0/1	t0001	1244	190	39	46	70	11	23	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	1/0	t0002	1244	82	28	9	42	0	2	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0003	1244	4	0	0	4	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0004	1244	2	1	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0005	1244	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0006	1244	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0007	1244	1	0	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0008	1244	1	0	0	0	1	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0009	1244	1	0	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0010	1244	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0011	1244	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0012	1244	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0013	1244	1	0	0	0	0	1	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	t0014	1265	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT3_chr11_64201721_64228891	0/0	t0001	507	195	50	40	77	4	24	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	1/1	t0002	508	155	15	27	85	8	18	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	t0003	507	19	18	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	t0004	507	1	1	0	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FER_chr5_108742897_109201841	1/0	t0001	9576	27	10	5	9	0	2	copy fasta	FER	chr5	108742897	109201841