JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FER_chr5_108742897_109201841	0/0	t0002	9573	27	13	6	5	1	2	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0003	9538	14	0	0	10	1	3	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0004	9579	6	1	0	1	0	4	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0005	9579	5	5	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0006	9572	4	4	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0007	9576	3	3	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0008	9574	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0009	9573	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0010	9573	2	1	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0011	9573	2	0	0	2	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0012	9573	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0013	9575	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0014	9568	2	0	2	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0015	9579	2	0	2	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0016	9573	1	0	0	0	1	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0017	9593	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0018	9577	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0019	9577	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0020	9576	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0021	9580	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0022	9576	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0023	9572	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0024	9564	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0025	9576	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0026	9576	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/1	t0027	9576	1	0	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0028	9576	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0029	9576	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0030	9574	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0031	9573	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0032	9573	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0033	9573	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0034	9573	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0035	9573	1	0	0	0	1	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0036	9573	1	0	1	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0037	9573	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0038	9573	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0039	9573	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0040	9569	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0041	9538	1	0	1	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0042	9538	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0043	9575	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0044	9568	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0045	9537	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0046	9579	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0047	9576	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0048	9579	1	1	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0049	9579	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0050	9579	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	t0051	9579	1	0	1	0	0	0	copy fasta	FER	chr5	108742897	109201841