JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FES_chr15_90879504_90900776	1/1	t0001	269	410	100	72	171	18	47	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	t0002	269	1	0	0	0	0	1	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	t0003	269	1	0	0	1	0	0	copy fasta	FES	chr15	90879504	90900776
FETUB_chr3_186635399_186658141	1/0	t0001	573	286	52	51	139	15	28	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0002	573	152	31	24	76	3	18	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0003	573	11	10	1	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0004	573	5	0	3	0	0	2	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0005	573	1	1	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0006	573	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0007	573	1	1	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0008	573	1	1	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	t0009	573	1	0	1	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FEV_chr2_218976087_218990184	1/1	t0001	690	289	60	61	130	8	28	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	t0002	690	56	22	3	25	0	6	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	t0003	689	13	0	2	7	0	4	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	t0004	690	3	3	0	0	0	0	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	t0005	690	2	2	0	0	0	0	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	t0006	690	1	1	0	0	0	0	copy fasta	FEV	chr2	218976087	218990184
FEZ1_chr11_125437881_125501265	1/0	t0001	3405	119	19	27	61	3	8	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0002	3405	88	28	13	30	6	11	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/1	t0003	3420	72	6	9	51	3	2	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0004	3405	15	6	4	0	2	3	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0005	3405	15	13	2	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0006	3405	9	1	5	0	2	1	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0007	3405	6	0	0	6	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0008	3405	3	0	0	3	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0009	3405	3	0	1	2	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0010	3405	3	2	0	0	0	1	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0011	3405	3	2	1	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0012	3405	3	3	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0013	3405	2	0	2	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0014	3405	2	2	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0015	3405	2	2	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0016	3405	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0017	3420	1	0	0	0	0	1	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0018	3420	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0019	3405	1	1	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0020	3405	1	1	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0021	3405	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0022	3405	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0023	3405	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0024	3405	1	1	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0025	3405	1	0	0	0	0	1	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	t0026	3405	1	1	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ2_chr2_36547258_36603168	1/1	t0001	932	185	40	38	69	11	25	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0002	934	102	18	8	73	1	2	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0003	941	97	23	24	33	4	13	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0004	934	5	5	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0005	934	4	0	0	4	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0006	934	3	3	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168