JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FEZ2_chr2_36547258_36603168	0/0	t0007	934	2	2	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0008	934	2	2	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0009	932	2	0	0	0	0	2	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0010	938	1	0	0	1	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	t0011	941	1	1	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZF1_chr7_122296303_122309750	0/1	t0001	1008	245	60	45	106	13	20	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	1/0	t0002	1008	154	35	27	70	5	16	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	t0003	1008	15	0	4	5	0	6	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	t0004	1008	14	3	0	11	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	t0005	1009	4	0	0	4	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	t0006	1009	2	0	2	0	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	t0007	1008	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	t0008	1008	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF2_chr3_62364681_62378550	1/0	t0001	733	299	81	43	135	8	31	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/1	t0002	734	114	6	24	63	10	10	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	t0003	734	4	0	1	0	0	3	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	t0004	733	1	1	0	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	t0005	733	1	1	0	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	t0006	733	1	1	0	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FFAR1_chr19_35342902_35358864	0/0	t0001	4696	120	13	29	63	6	9	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0002	4696	56	3	11	40	2	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/1	t0003	4697	34	2	18	0	7	6	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0004	4696	29	0	1	23	0	5	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0005	4697	19	3	9	4	1	2	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0006	4697	19	6	1	11	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0007	4696	16	11	5	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0008	4696	16	9	0	2	0	5	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0009	4696	14	0	0	12	0	2	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0010	4696	13	0	2	8	1	2	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0011	4697	8	0	0	8	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0012	4696	8	0	0	8	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0013	4696	7	0	0	7	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0014	4696	6	6	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0015	4696	6	6	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0016	4696	4	0	0	0	0	4	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0017	4696	4	0	0	0	0	4	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0018	4696	4	0	0	4	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0019	4696	3	3	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0020	4696	3	3	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0021	4696	3	3	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0022	4696	3	0	0	3	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0023	4696	3	3	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0024	4696	3	0	0	2	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0025	4697	2	0	1	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0026	4697	2	2	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0027	4697	2	1	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0028	4697	2	0	2	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0029	4696	2	0	0	2	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0030	4696	2	2	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0031	4696	2	2	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864