Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP5_chr14_64460499_64479503	0/0	t0042	5204	1	0	0	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0043	5204	1	0	0	1	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0044	5205	1	0	1	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0045	5204	1	0	1	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	t0046	5203	1	1	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP6_chr14_32324298_32842684	0/1	t0001	8026	32	12	7	9	0	3	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0002	8020	18	2	7	5	1	3	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0003	8026	11	2	3	5	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0004	8025	7	7	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0005	8024	7	3	0	2	0	2	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0006	8020	6	6	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0007	8028	5	5	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0008	8024	5	2	0	0	0	3	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	1/0	t0009	8025	4	1	0	0	1	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0010	8025	4	4	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0011	8037	3	0	0	2	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0012	8026	3	3	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0013	8026	3	3	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0014	8038	2	0	0	1	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0015	8026	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0016	8026	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0017	8024	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0018	8025	2	1	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0019	8025	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0020	8024	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0021	8026	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0022	8038	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0023	8020	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0024	8036	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0025	8026	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0026	8019	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0027	8020	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0028	8020	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0029	8020	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0030	8024	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0031	8037	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0032	8026	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0033	8026	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0034	8026	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0035	8026	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0036	8025	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0037	8025	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0038	8026	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0039	8026	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0040	8026	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0041	8026	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0042	8028	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0043	8020	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0044	8020	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0045	8020	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684