JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FFAR1_chr19_35342902_35358864	0/0	t0032	4696	2	1	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0033	4697	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0034	4697	1	0	0	0	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0035	4697	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0036	4697	1	0	0	0	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0037	4697	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0038	4697	1	0	0	0	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0039	4697	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0040	4697	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0041	4697	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0042	4697	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0043	4696	1	0	0	0	1	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0044	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0045	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0046	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0047	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0048	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0049	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0050	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0051	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0052	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0053	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0054	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0055	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0056	4695	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0057	4696	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0058	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0059	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0060	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0061	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	1/0	t0062	4695	1	0	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0063	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0064	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0065	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0066	4696	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0067	4696	1	0	0	0	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0068	4696	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0069	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0070	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0071	4696	1	0	0	0	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0072	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0073	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0074	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	t0075	4696	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR2_chr19_35443257_35456767	1/0	t0001	1184	218	26	36	122	7	26	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0002	1184	70	1	16	44	4	5	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0003	1185	39	5	13	18	1	2	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0004	1183	39	25	1	9	3	1	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/1	t0005	1184	23	6	8	1	2	5	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0006	1185	20	19	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767