JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FFAR2_chr19_35443257_35456767	0/0	t0007	1184	9	2	1	0	0	6	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0008	1183	7	0	1	5	0	1	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0009	1185	5	0	2	2	0	1	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0010	1184	3	3	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0011	1185	3	3	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0012	1184	3	3	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0013	1185	2	2	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0014	1185	2	0	2	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0015	1184	2	1	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0016	1183	1	0	0	0	0	1	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0017	1183	1	1	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0018	1184	1	0	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0019	1184	1	0	0	1	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0020	1185	1	0	0	1	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0021	1184	1	0	0	1	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0022	1183	1	0	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0023	1183	1	1	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	t0024	1184	1	0	0	0	1	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR3_chr19_35353460_35365489	0/0	t0001	760	176	53	19	77	6	21	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0002	760	73	4	25	34	3	7	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0003	760	36	1	21	0	7	7	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0004	760	35	16	1	17	0	1	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0005	519	30	2	7	20	1	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0006	760	15	4	2	5	1	3	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0007	760	15	9	0	2	0	4	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0008	760	9	0	0	9	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0009	760	7	0	0	7	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0010	760	4	4	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0011	760	2	0	2	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0012	760	2	1	1	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0013	760	2	2	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0014	760	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0015	202	1	0	0	0	0	1	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0016	760	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	1/0	t0017	760	1	0	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0018	760	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0019	760	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0020	760	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0021	760	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	t0022	760	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR4_chr10_93561665_93595072	1/0	t0001	2520	232	29	46	126	7	23	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/1	t0002	2519	58	9	14	17	4	13	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0003	2521	15	15	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0004	2520	14	5	4	0	0	5	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0005	2521	8	8	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0006	2520	8	0	7	0	0	1	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0007	2521	7	6	1	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0008	2519	5	1	0	4	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0009	2519	4	4	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0010	2519	4	4	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072