JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FFAR4_chr10_93561665_93595072	0/0	t0011	2521	3	3	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0012	2520	3	0	0	3	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0013	2519	3	0	1	0	1	1	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0014	2519	3	0	1	1	1	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0015	2520	2	0	0	2	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0016	2520	2	0	0	2	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0017	2520	2	1	1	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0018	2519	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0019	2519	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0020	2518	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0021	2521	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0022	2520	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0023	2520	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0024	2521	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0025	2521	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0026	2521	1	0	0	0	0	1	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0027	2521	1	0	1	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0028	2521	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0029	2520	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0030	2520	1	0	0	0	1	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0031	2519	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0032	2520	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0033	2519	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0034	2520	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0035	2520	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0036	2519	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0037	2520	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	t0038	2520	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FGA_chr4_154580275_154595742	1/1	t0001	275	425	92	71	192	18	50	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	t0002	275	1	1	0	0	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	t0003	275	1	0	1	0	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	t0004	599	1	1	0	0	0	0	copy fasta	FGA	chr4	154580275	154595742
FGB_chr4_154558011_154577807	0/0	t0001	2166	193	54	17	112	3	7	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0002	2166	87	11	21	38	5	12	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0003	2165	63	1	15	37	4	6	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0004	2167	40	5	13	10	2	10	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	1/0	t0005	2166	27	1	8	8	2	7	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0006	2166	10	10	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0007	2166	9	9	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0008	2166	5	5	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0009	2166	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0010	2166	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0011	2166	1	0	1	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0012	2165	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0013	2166	1	0	0	0	0	1	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0014	2166	1	0	0	0	0	1	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/1	t0015	2166	1	0	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0016	2166	1	0	1	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0017	2165	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	t0018	2166	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807