JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGD1_chrX_54440454_54501234	1/1	t0001	1458	124	37	28	36	7	14	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0002	1458	65	0	9	51	1	4	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0003	1456	31	10	2	17	0	2	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0004	1459	19	16	2	0	1	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0005	1459	4	0	1	3	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0006	1458	3	0	1	0	1	1	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0007	1457	2	1	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0008	1457	2	0	0	2	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0009	1456	2	2	0	0	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0010	1459	1	0	0	0	0	1	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0011	1459	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0012	1460	1	0	0	0	0	1	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0013	1459	1	0	1	0	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0014	1458	1	1	0	0	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0015	1458	1	0	0	0	1	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0016	1458	1	1	0	0	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0017	1458	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0018	2689	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0019	1460	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0020	1458	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	t0021	1458	1	0	0	0	0	1	copy fasta	FGD1	chrX	54440454	54501234
FGD2_chr6_37000655_37034069	0/0	t0001	1081	116	23	21	55	2	15	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0002	1077	109	19	15	72	2	1	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0003	1082	36	7	8	15	0	6	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0004	1070	35	1	5	11	6	12	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0005	1074	23	9	4	3	4	3	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0006	1078	20	2	2	16	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0007	1070	18	2	1	15	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0008	1086	10	5	4	0	1	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0009	1087	9	7	2	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0010	1080	8	0	1	4	0	3	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0011	1070	7	1	1	4	0	1	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0012	1092	5	1	1	0	1	2	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/1	t0013	1093	4	0	3	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0014	1081	3	3	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0015	1084	3	3	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0016	1088	3	2	0	0	0	1	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0017	1069	3	3	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	1/0	t0018	1070	2	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0019	1085	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0020	1091	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0021	1092	2	1	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0022	1093	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0023	1094	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0024	1083	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0025	1090	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0026	1091	1	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0027	1081	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0028	1082	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	t0029	1081	1	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069