JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGD3_chr9_92942523_93041233	0/0	t0001	1069	117	23	30	46	7	11	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	1/0	t0002	1069	65	9	16	30	0	9	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/1	t0003	1069	43	4	4	19	4	11	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0004	1069	43	27	7	7	1	1	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0005	1069	21	0	2	16	0	3	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0006	1069	12	0	0	12	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0007	1069	5	5	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0008	1069	3	0	1	2	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0009	1069	2	2	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0010	1069	2	0	2	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0011	1069	2	2	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0012	1069	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0013	1069	1	0	0	0	0	1	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0014	1069	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0015	1069	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0016	1069	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0017	1069	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	t0018	1069	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD4_chr12_32394558_32651050	0/0	t0001	5754	23	1	4	15	0	3	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0002	5754	20	3	5	9	0	3	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0003	5754	18	1	7	6	1	3	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0004	5754	17	0	3	12	0	2	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0005	5753	13	2	11	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0006	5755	11	0	2	5	2	2	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/1	t0007	5755	10	1	2	4	1	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0008	5754	9	6	2	0	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0009	5754	8	0	3	2	1	2	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0010	5755	8	8	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0011	5754	8	5	0	2	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0012	5750	6	0	4	0	1	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0013	5754	6	5	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0014	5754	5	3	0	1	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0015	5754	3	3	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0016	5754	3	0	0	3	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0017	5754	3	3	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0018	5754	3	0	1	0	0	2	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0019	5750	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0020	5755	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0021	5754	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0022	5750	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0023	5754	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0024	5754	2	0	0	1	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0025	5754	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0026	5755	2	2	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0027	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0028	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	1/0	t0029	5754	1	0	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0030	5753	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0031	5755	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0032	5518	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050