JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGD4_chr12_32394558_32651050	0/0	t0033	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0034	5753	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0035	5755	1	0	0	0	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0036	5755	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0037	5754	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0038	5754	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0039	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0040	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0041	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0042	5754	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0043	5753	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0044	5755	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0045	5755	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0046	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0047	5755	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0048	5754	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0049	5754	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0050	5754	1	0	0	0	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0051	5754	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0052	5754	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0053	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0054	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0055	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0056	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0057	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0058	5753	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0059	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0060	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0061	5755	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0062	5753	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0063	5754	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0064	5754	1	0	0	0	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0065	5754	1	0	0	0	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0066	5753	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0067	5754	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	t0068	5754	1	0	0	0	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD5_chr3_14813962_14939571	1/1	t0001	1515	300	58	57	135	16	32	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0002	1513	15	1	8	6	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0003	1515	6	0	0	6	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0004	1515	4	4	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0005	1515	3	0	1	0	0	2	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0006	1515	2	2	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0007	1515	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0008	1515	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0009	1515	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0010	1515	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0011	1515	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0012	1515	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0013	1515	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0014	1515	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571