JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGD5_chr3_14813962_14939571	0/0	t0015	1515	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0016	1515	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0017	1515	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	t0018	1515	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD6_chr12_95071749_95222467	1/0	t0001	4999	69	10	14	37	1	6	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/1	t0002	4999	39	6	8	20	1	3	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0003	5003	37	2	8	22	1	4	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0004	5002	28	0	0	28	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0005	5004	22	11	3	1	2	5	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0006	4999	15	1	1	12	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0007	5000	15	1	6	3	3	2	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0008	4998	11	11	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0009	5002	10	5	2	0	0	3	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0010	5001	9	0	5	1	2	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0011	4998	9	0	4	0	1	4	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0012	5000	8	0	0	7	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0013	5002	6	0	3	0	3	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0014	5003	5	0	0	5	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0015	5000	4	0	2	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0016	5003	4	0	0	2	0	2	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0017	5002	4	4	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0018	4998	3	2	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0019	5000	3	0	0	3	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0020	5002	3	0	3	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0021	5004	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0022	5000	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0023	5002	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0024	5002	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0025	5000	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0026	5002	2	1	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0027	5002	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0028	5006	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0029	5005	2	1	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0030	5004	2	0	1	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0031	4999	2	1	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0032	5002	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0033	5001	2	0	2	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0034	5001	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0035	5003	2	0	0	1	1	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0036	5001	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0037	5000	2	1	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0038	5002	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0039	5003	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0040	5002	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0041	4999	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0042	5004	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0043	5002	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0044	4998	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0045	4999	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0046	4999	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467