JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGD6_chr12_95071749_95222467	0/0	t0047	4999	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0048	4998	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0049	5001	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0050	5000	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0051	5000	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0052	5000	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0053	5000	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0054	4999	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0055	5002	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0056	5000	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0057	4999	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0058	4999	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0059	5003	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0060	5002	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0061	5004	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0062	5003	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0063	5002	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0064	5003	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0065	5004	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0066	4999	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0067	5002	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0068	5002	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0069	5001	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0070	5000	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0071	5000	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0072	4999	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0073	5003	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0074	5003	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0075	5002	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0076	4999	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0077	5002	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0078	5001	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0079	5000	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0080	5003	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0081	4999	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0082	5000	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	t0083	4999	1	0	0	0	1	0	copy fasta	FGD6	chr12	95071749	95222467
FGF10_chr5_44295247_44394420	0/0	t0001	5476	47	2	9	30	1	5	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0002	5487	41	0	7	25	3	6	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/1	t0003	5483	32	1	6	23	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0004	5491	22	9	0	13	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0005	5483	18	12	2	0	0	4	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0006	5491	17	1	5	6	3	2	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0007	5487	15	6	1	8	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0008	5483	8	0	6	0	1	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0009	5490	7	6	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0010	5527	7	0	2	5	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0011	5535	7	0	0	7	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0012	5476	6	5	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0013	5480	6	2	2	2	0	0	copy fasta	FGF10	chr5	44295247	44394420