JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF10_chr5_44295247_44394420	0/0	t0014	5495	6	0	0	6	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0015	5479	5	0	3	1	1	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0016	5495	5	0	0	5	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0017	5472	5	2	1	2	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0018	5484	5	3	1	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0019	5531	5	0	0	5	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0020	5462	4	4	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0021	5499	3	0	0	3	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0022	5474	3	3	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0023	5488	3	0	1	0	2	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0024	5486	3	0	3	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0025	5483	3	0	2	0	1	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0026	5483	3	3	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0027	5486	2	0	1	0	1	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0028	5476	2	2	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0029	5479	2	2	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0030	5483	2	2	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	1/0	t0031	5487	2	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0032	5519	2	0	0	1	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0033	5523	2	0	2	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0034	5531	2	0	0	2	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0035	5491	2	2	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0036	5475	2	0	0	2	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0037	5479	2	2	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0038	5487	2	0	1	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0039	5487	2	0	0	2	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0040	5491	2	0	0	2	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0041	5474	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0042	5491	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0043	5486	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0044	5494	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0045	5486	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0046	5484	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0047	5487	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0048	5535	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0049	5483	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0050	5499	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0051	5487	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0052	5479	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0053	5478	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0054	5482	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0055	5479	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0056	5490	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0057	5464	1	0	0	0	1	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0058	5476	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0059	5476	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0060	5476	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0061	5488	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0062	5491	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0063	5492	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420