JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF10_chr5_44295247_44394420	0/0	t0064	5467	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0065	5527	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0066	5539	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0067	5476	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0068	5490	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0069	5491	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0070	5483	1	0	0	1	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0071	5487	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0072	5479	1	0	0	0	0	1	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0073	5479	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0074	5483	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0075	5487	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	t0076	5460	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF11_chr17_7434512_7449937	0/0	t0001	1901	148	14	23	97	4	10	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0002	1901	88	25	17	39	3	4	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/1	t0003	1901	78	26	21	10	7	13	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0004	1902	12	11	1	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	1/0	t0005	1901	8	7	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0006	1901	3	0	3	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0007	1901	2	1	0	0	0	1	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0008	1902	2	2	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0009	1901	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0010	1901	1	0	0	0	0	1	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0011	1921	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0012	1901	1	0	0	1	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0013	1901	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0014	1901	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0015	1901	1	0	0	0	0	1	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0016	1901	1	0	1	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	t0017	1901	1	0	0	1	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF12_chr3_192134390_192732541	0/0	t0001	4809	9	8	1	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0002	4810	6	3	0	2	0	1	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0003	4815	5	5	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0004	4813	5	1	1	3	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0005	4808	5	5	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0006	4812	4	0	1	2	0	1	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0007	4811	4	0	2	2	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0008	4816	4	1	0	1	0	2	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0009	4813	3	0	2	0	0	1	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0010	4821	3	2	0	0	0	1	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0011	4808	3	1	1	1	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0012	4810	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0013	4814	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0014	4813	2	0	1	1	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0015	4822	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0016	4808	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0017	4811	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0018	4809	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0019	4811	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0020	4811	2	2	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541