Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP6_chr14_32324298_32842684	0/0	t0046	8023	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0047	8024	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0048	8024	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0049	8026	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0050	8025	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0051	8026	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	t0052	8020	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP7_chr6_131130467_131288532	1/1	t0001	2104	96	11	31	30	7	15	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0002	2104	49	3	7	29	3	7	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0003	2104	39	5	7	15	6	6	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0004	2102	27	0	2	25	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0005	2102	13	13	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0006	2102	10	0	1	9	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0007	2102	7	7	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0008	2101	7	7	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0009	2102	4	4	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0010	2101	4	3	1	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0011	2102	3	3	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0012	2102	3	0	2	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0013	2104	3	0	0	3	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0014	2113	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0015	2113	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0016	2113	2	1	1	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0017	2111	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0018	2117	2	0	0	2	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0019	2119	2	1	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0020	2104	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0021	2104	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0022	2104	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0023	2101	2	2	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0024	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0025	2104	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0026	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0027	2102	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0028	2162	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0029	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0030	2104	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0031	2101	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0032	2101	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0033	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0034	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0035	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0036	2102	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0037	2102	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0038	2104	1	0	1	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0039	2104	1	0	1	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0040	2104	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0041	2102	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	t0042	2104	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP8L_chr19_15375050_15423988	1/1	t0001	138	253	80	54	84	4	29	copy fasta	AKAP8L	chr19	15375050	15423988