JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF12_chr3_192134390_192732541	0/0	t0021	4809	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0022	4810	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0023	4812	1	0	1	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0024	4812	1	0	1	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0025	4813	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0026	4813	1	0	1	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0027	4811	1	0	1	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0028	4812	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0029	4811	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0030	4815	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0031	4823	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0032	4807	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0033	4808	1	0	1	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0034	4809	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0035	4808	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0036	4809	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0037	4811	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0038	4807	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0039	4808	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0040	4810	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF12_chr3_192134390_192732541	0/0	t0041	4808	1	1	0	0	0	0	copy fasta	FGF12	chr3	192134390	192732541
FGF13_chrX_138609727_138716717	0/0	t0001	18837	17	4	3	6	1	3	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0002	18836	14	0	0	14	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0003	18837	13	1	6	3	1	2	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0004	18843	11	2	1	4	1	3	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0005	18863	10	0	4	6	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0006	18839	8	0	5	1	2	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0007	18838	7	1	1	4	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0008	18835	7	1	2	0	1	3	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0009	18838	5	0	0	5	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0010	18840	5	5	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0011	18864	4	0	2	1	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0012	18837	3	0	3	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0013	18837	3	0	0	3	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0014	18838	3	3	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0015	18844	3	0	2	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0016	18838	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0017	18835	2	2	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0018	18837	2	0	2	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0019	18836	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0020	18836	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0021	18836	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0022	18835	2	0	0	1	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0023	18834	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0024	18802	2	2	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0025	18832	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0026	18830	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0027	18839	2	0	0	2	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0028	18836	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0029	18837	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717