JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF13_chrX_138609727_138716717	0/0	t0030	18837	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0031	18836	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0032	18835	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0033	18862	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0034	18835	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0035	18864	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0036	18796	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0037	18839	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0038	18837	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0039	18838	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0040	18836	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0041	18834	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0042	18841	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0043	18833	1	0	0	0	1	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0044	18839	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0045	18838	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0046	18868	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0047	18867	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0048	18839	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0049	18837	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0050	18837	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0051	18837	1	0	0	0	1	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0052	18838	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0053	18865	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0054	18835	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0055	18841	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0056	18839	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0057	18839	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0058	18837	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0059	18840	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0060	18865	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0061	18890	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0062	18836	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0063	18836	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0064	18831	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0065	18839	1	0	0	0	1	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0066	18839	1	0	0	0	1	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0067	18838	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0068	18838	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0069	18838	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0070	18834	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0071	18863	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0072	18835	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0073	18836	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0074	18835	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0075	18834	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0076	18836	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0077	18862	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0078	18909	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0079	18934	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717