JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF13_chrX_138609727_138716717	0/0	t0080	18937	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0081	18933	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0082	18833	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0083	18831	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0084	18833	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0085	18838	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0086	18834	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0087	18838	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0088	18838	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0089	18835	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0090	18834	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0091	18832	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0092	18836	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0093	18801	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0094	18802	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0095	18801	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0096	18800	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0097	18831	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0098	18834	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0099	18839	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0100	18832	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0101	18831	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0102	18839	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0103	18837	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0104	18772	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0105	18806	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0106	18804	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0107	18802	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0108	18833	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0109	18837	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0110	18836	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0111	18843	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0112	18841	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0113	18843	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0114	18843	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0115	18846	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0116	18844	1	0	1	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0117	18840	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0118	18838	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	1/0	t0119	18838	1	0	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0120	18837	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/1	t0121	18892	1	0	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0122	18873	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0123	18843	1	0	0	0	1	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0124	18843	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0125	18870	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0126	18839	1	0	0	0	0	1	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0127	18845	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0128	18835	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	t0129	18845	1	1	0	0	0	0	copy fasta	FGF13	chrX	138609727	138716717