JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF13_chrX_138609727_138716717	0/0	t0130	18839	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF14_chr13_101705804_101921945	0/0	t0001	12330	9	1	2	3	1	2	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0002	12323	7	0	0	6	0	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0003	12332	6	0	2	2	0	2	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0004	12327	6	0	5	1	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0005	12335	5	0	0	5	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0006	12325	5	0	1	1	2	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0007	12329	5	0	3	0	0	2	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0008	12330	5	1	2	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0009	12329	5	2	1	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0010	12332	4	0	1	3	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0011	12323	4	1	1	1	0	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0012	12325	4	0	0	3	0	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0013	12347	4	3	1	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0014	12317	3	2	1	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0015	12325	3	1	0	0	1	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0016	12334	3	3	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0017	12325	3	3	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0018	12332	3	0	0	2	0	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0019	12343	3	3	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0020	12325	3	0	0	3	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0021	12327	3	1	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0022	12322	3	0	0	3	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0023	12334	3	3	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0024	12320	3	3	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0025	12330	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0026	12333	2	0	2	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0027	12333	2	0	0	0	0	2	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0028	12338	2	2	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0029	12334	2	1	0	1	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0030	12332	2	0	0	1	0	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0031	12338	2	0	1	0	1	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0032	12336	2	0	2	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0033	12334	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0034	12325	2	0	1	0	1	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0035	12320	2	1	0	0	0	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0036	12323	2	0	0	0	0	2	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0037	12333	2	0	0	0	0	2	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0038	12330	2	0	0	0	1	1	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0039	12325	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0040	12333	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0041	12334	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0042	12335	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0043	12332	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0044	12328	2	0	0	2	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0045	12320	2	2	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0046	12321	2	2	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0047	12331	2	2	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0048	12323	2	1	1	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0049	12327	2	2	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945