JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF14_chr13_101705804_101921945	0/0	t0150	12328	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0151	12338	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0152	12325	1	0	0	1	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0153	12333	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0154	12344	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0155	12325	1	0	0	1	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0156	12324	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0157	12323	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0158	12343	1	0	1	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0159	12343	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0160	12324	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0161	12334	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	t0162	12329	1	1	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	1/0	t0163	12328	1	0	0	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF16_chrX_77442389_77462278	1/1	t0001	1043	259	53	31	138	9	26	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0002	1043	42	18	16	0	4	4	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0003	1043	3	3	0	0	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0004	1042	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0005	1042	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0006	1044	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0007	1043	1	0	1	0	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	t0008	1043	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF17_chr8_22037820_22053809	1/0	t0001	670	334	88	50	158	11	26	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/1	t0002	670	113	6	28	52	7	19	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	t0003	670	5	4	1	0	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	t0004	670	2	0	1	0	0	1	copy fasta	FGF17	chr8	22037820	22053809
FGF18_chr5_171414647_171462626	1/1	t0001	1375	359	82	67	151	18	39	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0002	1376	19	5	4	9	0	1	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0003	1375	2	1	1	0	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0004	1375	1	0	1	0	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0005	1375	1	0	1	0	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0006	1376	1	1	0	0	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0007	1375	1	1	0	0	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0008	1375	1	0	0	1	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0009	1375	1	0	0	0	0	1	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0010	1375	1	0	0	1	0	0	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	t0011	1375	1	0	0	0	0	1	copy fasta	FGF18	chr5	171414647	171462626
FGF19_chr11_69693238_69709022	1/1	t0001	1171	232	50	55	90	10	25	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0002	1171	197	40	25	105	6	21	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0003	1171	3	3	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0004	1171	2	0	2	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0005	1171	2	2	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0006	1171	1	0	0	1	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0007	1171	1	1	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0008	1171	1	1	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	t0009	1171	1	1	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF1_chr5_142587178_142691090	1/0	t0001	3281	73	8	11	30	3	20	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0002	3282	72	7	14	40	4	7	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/1	t0003	3281	36	5	16	12	2	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0004	3282	24	16	4	4	0	0	copy fasta	FGF1	chr5	142587178	142691090