JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF1_chr5_142587178_142691090	0/0	t0005	3282	16	3	2	9	1	1	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0006	3282	12	9	1	2	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0007	3282	11	0	0	11	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0008	3282	7	0	0	5	1	1	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0009	3282	7	3	0	4	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0010	3282	6	6	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0011	3282	6	4	2	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0012	3282	6	4	2	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0013	3282	5	5	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0014	3282	5	4	1	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0015	3282	4	4	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0016	3282	3	1	2	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0017	3282	3	0	0	3	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0018	3282	3	0	0	3	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0019	3282	3	0	2	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0020	3282	2	0	2	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0021	3282	2	1	0	0	1	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0022	3282	2	2	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0023	3281	2	0	0	2	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0024	3282	2	0	0	2	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0025	3282	2	1	1	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0026	3282	2	0	0	2	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0027	3282	2	1	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0028	3281	2	0	0	2	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0029	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0030	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0031	3281	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0032	3282	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0033	3282	1	0	1	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0034	3282	1	0	1	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0035	3281	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0036	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0037	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0038	3282	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0039	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0040	3281	1	0	0	0	0	1	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0041	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0042	3281	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0043	3281	1	0	1	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0044	3282	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0045	3282	1	1	0	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0046	3282	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0047	3282	1	0	0	1	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF1_chr5_142587178_142691090	0/0	t0048	3281	1	0	1	0	0	0	copy fasta	FGF1	chr5	142587178	142691090
FGF20_chr8_16987181_17007345	0/0	t0001	1205	175	9	37	99	6	24	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0002	1206	149	23	18	98	4	6	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0003	1205	33	20	10	0	2	1	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0004	1205	23	3	8	0	3	9	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	1/0	t0005	1205	17	16	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/1	t0006	1205	12	4	3	1	1	2	copy fasta	FGF20	chr8	16987181	17007345