JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF20_chr8_16987181_17007345	0/0	t0007	1205	12	0	4	1	2	5	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0008	1205	10	9	1	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0009	1205	6	0	0	6	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0010	1206	4	0	0	4	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0011	1205	3	3	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0012	1205	2	2	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0013	1206	1	0	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0014	1205	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0015	1205	1	0	1	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0016	1205	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0017	1205	1	0	0	0	0	1	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0018	1205	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0019	1206	1	0	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0020	1206	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0021	1206	1	0	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	t0022	1206	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF21_chr19_48750524_48763330	1/1	t0001	718	425	88	80	197	16	42	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0002	718	10	0	0	10	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0003	718	9	3	3	0	0	3	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0004	718	4	4	0	0	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0005	718	3	0	1	0	0	2	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0006	718	3	0	0	0	0	3	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0007	718	1	1	0	0	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	t0008	710	1	0	0	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF22_chr19_634879_649373	0/0	t0001	817	161	5	41	89	9	17	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/1	t0002	817	157	32	30	76	3	15	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0003	817	33	28	1	3	1	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	1/0	t0004	817	21	8	4	1	0	7	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0005	817	19	11	1	2	3	2	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0006	817	9	0	0	6	0	3	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0007	818	6	1	0	3	0	2	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0008	818	6	0	4	2	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0009	817	5	3	2	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0010	817	4	3	1	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0011	817	3	3	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0012	817	2	2	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0013	817	1	1	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0014	817	1	1	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0015	818	1	1	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0016	818	1	1	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0017	817	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0018	817	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0019	817	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	t0020	817	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF23_chr12_4363227_4384712	0/1	t0001	2241	127	16	16	81	5	8	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0002	2243	48	7	8	27	6	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0003	2245	38	7	4	17	1	9	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	1/0	t0004	2247	23	19	0	2	1	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0005	2240	23	4	2	7	1	9	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0006	2239	22	5	5	3	2	7	copy fasta	FGF23	chr12	4363227	4384712