JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FGF23_chr12_4363227_4384712	0/0	t0007	2244	21	6	5	9	0	1	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0008	2242	21	4	3	12	0	2	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0009	2244	16	0	14	1	0	1	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0010	2243	14	0	3	9	0	2	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0011	2246	14	3	1	6	0	4	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0012	2242	9	6	1	2	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0013	2248	8	5	2	1	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0014	2243	7	3	1	3	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0015	2241	7	0	0	7	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0016	2244	4	0	0	4	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0017	2245	4	0	3	0	0	1	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0018	2241	3	0	0	3	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0019	2242	2	0	2	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0020	2247	2	2	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0021	2242	2	2	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0022	2241	2	0	0	2	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0023	2234	2	2	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0024	2248	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0025	2247	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0026	2246	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0027	2245	1	0	1	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0028	2243	1	0	1	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0029	2243	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0030	2240	1	0	0	1	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0031	2241	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	t0032	2241	1	0	0	1	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF2_chr4_122821831_122903236	0/0	t0001	6184	48	1	8	24	4	11	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0002	6185	47	4	19	14	4	6	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0003	6185	22	7	8	5	0	2	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0004	6185	13	8	4	0	0	1	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/1	t0005	6184	12	1	5	0	2	3	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0006	6185	11	0	2	7	0	2	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0007	6185	10	10	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0008	6185	8	2	1	0	0	5	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0009	6184	7	6	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0010	6184	7	7	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0011	6185	6	6	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0012	6185	5	0	0	4	0	1	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0013	6185	4	3	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0014	6185	4	4	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0015	6185	4	1	1	1	0	1	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0016	6184	4	0	0	3	0	1	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0017	6185	3	2	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0018	6185	3	2	1	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0019	6185	3	1	2	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0020	6185	3	3	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0021	6184	2	2	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0022	6185	2	2	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0023	6185	2	2	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	t0024	6184	1	0	0	0	0	1	copy fasta	FGF2	chr4	122821831	122903236